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Mechanism of Yi-Qi-Bu-Shen Recipe for the Treatment of Diabetic Nephropathy Complicated with Cognitive Dysfunction Based on Network Pharmacology and Experimental Validation

Authors Li W, Liu Z, Song M, Shi Z, Zhang J, Zhou J, Liu Y, Qiao Y, Liu D

Received 1 August 2024

Accepted for publication 5 October 2024

Published 23 October 2024 Volume 2024:17 Pages 3943—3963

DOI https://doi.org/10.2147/DMSO.S481740

Checked for plagiarism Yes

Review by Single anonymous peer review

Peer reviewer comments 2

Editor who approved publication: Prof. Dr. Juei-Tang Cheng



Wenyi Li,1,2 Zhenguo Liu,1 Min Song,1 Zhenpeng Shi,1 Jihang Zhang,3 Junyu Zhou,1 Yidan Liu,1 Yun Qiao,4 Deshan Liu4

1First Clinical Medical College, Shandong University of Traditional Chinese Medicine, Jinan, People’s Republic of China; 2Research Center for Basic Medical Sciences, Qilu Hospital of Shandong University, Jinan, People’s Republic of China; 3Traditional Chinese Medicine College, Shandong University of Traditional Chinese Medicine, Jinan, People’s Republic of China; 4Department of Traditional Chinese Medicine, Qilu Hospital of Shandong University, Jinan, People’s Republic of China

Correspondence: Deshan Liu, Department of Traditional Chinese Medicine, Qilu Hospital of Shandong University, Jinan, Shandong, 250012, People’s Republic of China, Tel +86 18560087381, Email [email protected]

Context: Diabetic nephropathy (DN) and cognitive dysfunction (CD) are common complications of diabetes. Yi-Qi-Bu-Shen Recipe (YQBS) can effectively reduce blood glucose, improve insulin resistance, and delay the progression of diabetic complications. The underlying mechanisms of its effects need to be further studied.
Objective: This study elucidates the mechanism of YQBS in DN with CD through network pharmacology and experimental validation.
Materials and Methods: Protein-protein interaction, Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed. Male Sprague-Dawley (SD) rats were divided into 6 groups: model, YQBS (2, 4, 8 g/kg), positive control (metformin, 200 mg/kg), and control; the DN model was established by high sugar and high fat diet combined with intraperitoneal streptozotocin injection. After the DN model was established, the rats were gavaged for 10 weeks. Serum, kidneys, and hippocampus tissues were collected to measure the expression levels of TLR4, NF-κB, TNF-α, and IL-6.
Results: The network pharmacology analysis showed that quercetin and kaempferol were the main active components of YQBS. TNF and IL-6 were the key targets, and TLR4/NF-κB pathway was crucial to YQBS in treating DN complicated with CD. Experimental validation showed that the intervention of YQBS can reduce TNF-α and IL-6 in serum, and also significantly decreases the protein expression of TLR4 and NF-κB.
Conclusion: YQBS exerts anti-inflammatory effects on DN with CD through TLR4/NF-κB pathway. This study provides a biological basis for the scientific usage of YQBS in inflammation diseases and supplies experimental evidence for future traditional Chinese medicine development.

Keywords: Yiqi Bushen Recipe, diabetes nephropathy, cognitive dysfunction, network pharmacology, inflammation


A Letter to the Editor has been published for this article.

A Response to Letter by Dr Gan has been published for this article.


Graphical Abstract:

Introduction

As a common endocrine metabolic disorder caused by multiple factors, diabetes mellitus (DM) is a complex disease driven by various pathological and physiological processes. It is characterized by chronic hyperglycemia, which can lead to chronic damage and dysfunction in various organs.1 Currently, DM has become one of the world’s public health problems that seriously threaten human health. Diabetic nephropathy (DN) is one of the most prevalent microvascular complications of DM, playing a crucial role in chronic renal failure and end-stage renal disease.2 About 30% to 40% of DM patients are at risk of developing DN, with a high likelihood of progressing to end-stage renal disease; moreover, the 5-year survival rate for end-stage renal disease patients is typically below 20%.3 Cognitive dysfunction (CD) is not uncommon among individuals with DM. In the 1920s, Miles and Root first suggested the presence of CD in DM. Numerous epidemiological studies have shown that there is a relationship between diabetes and cognitive impairment.4 The metabolic disruptions triggered by hyperglycemia can induce damage to the central nervous system, resulting in cognitive impairment.5–7 In clinical practice, DN patients may have different degrees of CD. The precise mechanism underlying the combination of DN and CD remains somewhat unclear, garnering significant attention from scholars in recent years. Research has indicated that in individuals with type 2 diabetes and glycosylated hemoglobin >7.5% and a high risk of cardiovascular disease, cognitive decline is related to DN.8 One explanation for the association between kidney disease and cognitive impairment may lie in the similar hemodynamics of the kidneys and brain. Both microcirculatory systems are characterized by low resistance and are exposed to high circulating flow, making them more susceptible to vascular damage.9,10 CD in DM patients is like the microvascular lesions observed in kidney impairment, manifesting as thickening of the capillary basement membrane, lumen narrowing, vascular endothelial dysfunction, and increased vascular permeability, etc. Vascular endothelial dysfunction-induced impairment of self-regulation may elevate pressure within the two circulatory systems, leading to organ damage.11,12 At present, the treatment of DN and CD primarily involves a comprehensive approach focused on reducing blood sugar, blood pressure, and lipid levels, alongside symptomatic therapies. Multiple studies have indicated that exaggerated expressions of Toll-like receptor 4 (TLR4) and NF-κB are positively associated with the progression of DN and CD, while proinflammatory factors like interleukin-6 (IL-6) as well as tumor necrosis factor (TNF) are closely correlated with DN and CD.13–16

Traditional Chinese medicine (TCM) believes that DN, known as “Xiaoke” in Chinese, can be attributed to Shenqi deficiency leading to functional disorders.17 Yi-Qi-Bu-Shen Recipe (YQBS) was derived from the classic formula Shen-Qi-Di-Huang decoction with modifications, focusing on tonifying qi and kidney, promoting blood circulation, and resolving phlegm. Shen-Qi-Di-Huang decoction was first recorded in the classical Chinese medicine book “Identify the Origins of Miscellaneous Diseases” (Zabing Yuanliu Xizhu). This decoction targets syndromes related to qi and yin deficiency, as well as kidney deficiency, exhibiting significant therapeutic effects in treating DN.18–21 YQBS consists of nine ingredients of TCM, including the root of Astragalus membranaceus Fisch. [Fabaceae] (HQ; Pinyin name Huangqi), the rhizome of Rehmannia glutinosa Libosch. [Orobanchaceae] (SD; Pinyin name Shudihuang), the rhizome of Polygonatum sibiricum Red. [Asparagaceae] (HJ; Pinyin name Huangjing), the rhizome of Ligusticum chuanxiong Hort. [Apiaceae] (CX; Pinyin name Chuanxiong), the mature fruit of Lycium barbarum L. [Solanaceae] (GQZ; Pinyin name Gouqizi), the leaf of Epimedium brevicornu Maxim. [Berberidaceae] (YYH; Pinyin name Yinyanghuo), the rhizome of Atractylodes lancea DC. [Asteraceae] (CZ; Pinyin name Cangzhu), the root of Pueraria lobata (Willd). Ohwi [Fabaceae] (GG; Pinyin name Gegen), and the rhizome of Coptis chinensis Franch. [Ranunculaceae] (HL; Pinyin name Huanglian). Previous studies conducted by our team have demonstrated that YQBS can delay the progression of DM and its associated complications.22,23 Evidence suggests that YQBS (formerly known as NaoShenKang Capsule) can ameliorate diabetes symptoms and complications in DM patients.24 Animal experiments also demonstrated that YQBS could effectively improve renal function, mitigate kidney pathological changes, and alleviate renal inflammation and fibrosis.25,26 Furthermore, our results in previous research indicated that YQBS might improve CD in diabetic rats by enhancing the antioxidant activity of neurons, inhibiting apoptosis, and alleviating the damage of hippocampal neurons.27,28

In conclusion, the mechanism by which YQBS improves DN complicated with CD remains unclear. Therefore, this study used network pharmacology and experimental validation to explore the possible targets and mechanisms of YQBS in treating DN combined with CD.

Materials and Methods

Network Pharmacology Analysis

Screening for Active Components in YQBS and Target Prediction

The Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP, https://tcmspw.com/tcmsp.php)29 is a pharmacological database of Chinese herbal medicine that includes a network of targets for drugs, chemicals, targets, and diseases, along with the pharmacokinetic characteristics of compounds such as oral bioavailability (OB) and drug likeness (DL).30 The compounds of YQBS were acquired from TCMSP, with OB ≥ 30% alongside DL ≥ 0.18 serving as the screening criteria.31 The corresponding targets of the active ingredients within YQBS were predicted by TCMSP. The UniProt database (https://www.uniprot.org/)32 was adopted to standardize the target names of YQBS active ingredients into gene names. The visualization of YQBS compound-target network was achieved using Cytoscape 3.9.1.

Screening for Disease Related Targets

The potential targets of DN (search term “diabetic nephropathy”) and CD (search term “cognitive dysfunction”) were searched from the five databases: OMIM (https://www.omim.org/),33 GeneCards (https://www.genecards.org/),34 DrugBank (https://go.drugbank.com/),35 DisGeNET (https://www.disgenet.org/),36 and TTD (http://db.idrblab.net/ttd/).37

Prediction of YQBS Targets for DN with CD Treatment

The overlapping targets of YQBS, DN, and CD were identified using Venny 2.1.0, and the drug-disease-target network was visualized using Cytoscape.

Construction of Protein–Protein Interaction (PPI) Network

The shared targets of drugs and diseases were imported into the STRING database (https://string-db.org/)38 to construct a PPI network. The CytoNCA plugin in Cytoscape 3.9.1 was used to calculate the parameters of nodes: betweenness centrality (BC), closeness centrality (CC), degree centrality (DC), eigenvector centrality (EC), network centrality (NC), and local average connectivity (LAC). A node’s importance in the network increases with a higher parameter value. The node data were sieved based on the average of these six parameters, and nodes surpassing the average were considered key targets.39 PPI networks for both total and key targets were constructed using Cytoscape.

Enrichment Analysis

The key targets were imported into the DAVID database (https://david.ncifcrf.gov/)40 for Gene Ontology (GO) enrichment analysis. The species “Homo sapiens” was selected to examine biological processes (BP), cellular components (CC), as well as molecular functions (MF) related to the intervention of YQBS in the merging of DN and CD. Metascape (https://metascape.org/)41 was utilized for Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. The bioinformatics online platform (https://www.bioinformatics.com.cn/), an online platform for data analysis and visualization to create bubble diagrams and signal pathway diagrams, was used for visualization.

Construction of Drug-Target-Pathway Network

The primary active compounds of YQBS, key targets, and main signaling pathways were imported into Cytoscape 3.9.1 to construct a drug-target-pathway network, to examine the potential mechanisms of YQBS in treating DN with CD.

Molecular Docking

The 2D structures of the main active ingredients of YQBS were obtained from the PubChem website (https://pubchem.ncbi.nlm.nih.gov/).42 Subsequently, they were converted into 3D structures through Chem3D software. The protein structures of the key targets were downloaded from the PDB database (https://www.rcsb.org/).43 Molecular docking was conducted through Autodock Vina and PyMol.44

Experimental Validation

Reagents

Streptozotocin (STZ, IS0250) and 0.1 mol/L Sodium Citrate buffer (C1013) were bought from Beijing Solarbio Science & Technology Co. (Beijing, China). The primary antibodies used were as follows: TLR4 (A21626) was purchased from ABclonal Technology Co. (Wuhan, China); NF-κB p65 (WL01980) and phospho-NF-κB p65 (WL02169) were purchased from Shenyang Wanlei Biotechnology Co. (Shenyang, China); β-actin (81115-1-RR) was purchased from Proteintech (Wuhan, China). The horseradish peroxidase (HRP)-conjugated secondary antibodies (SA00001-2) were also purchased from Proteintech. Enzyme-linked immunosorbent assay (ELISA) kits for Urinary microalbumin (ml059011), TNF-α (ml002859), and IL-6 (ml102828) for rats were purchased from Shanghai Enzyme-linked Biotechnology Co. (Shanghai, China).

Animals

Thirty-six 6-week-old male Sprague Dawley rats were purchased from Jinan Pengyue Experimental Animal Breeding Co. (Jinan, China). All animals were kept in the specific pathogen-free room at the Laboratory Animal Center of Qilu Hospital of Shandong University (Shandong, China) with a 12 h light/dark cycle. All rats and experimental protocol were approved by the Experimental Animal Ethics Committee of Qilu Hospital of Shandong University (DWLL-2022-073).

Preparation of YQBS Recipe

In this study, the nine herbs (30 g HQ, 24 g SD, 20 g HJ, 12 g CX, 12 g GQZ, 18 g YYH, 10 g CZ, 24 g GG, 6 g HL) in YQBS were sourced from the pharmacy of Qilu Hospital, and all were included in the Chinese Pharmacopoeia. The herbs were authenticated by Professor Lihong Zhong. Voucher specimen (T001700368, T001700710, T001700444, T001200132, T001700294, T001700850, T000500258, T000100286, T000200367) was preserved in Qilu Hospital. The herbs mentioned above were decocted and extracted three times with total 20 times the amount of water (added approximately 3100 mL of water to 156 g herbs) at 100°C, each time for 2 h. The resulting decoction liquid was combined, filtered, concentrated to a thick paste, transferred to a vacuum drying oven (80°C) for drying, ground into a powder, and stored in a refrigerator at 4°C for future use. The quality control of YQBS was established.45 Each gram of YQBS dried Chinese medicine powder corresponded to 3.564 g of crude medicine.

Ultra-Performance Liquid Chromatography Tandem Mass Spectrometry (UPLC-MS/MS) Analysis

The components analysis of YQBS was conducted using Ultra Performance Liquid Chromatography (SCIEX ExionLCTM AD). The YQBS dry powder of TCM was dissolved in a liquid. A 100 μL YQBS liquid sample was placed into a 1.5 mL sterile centrifuge tube, and 100 μL of pre-cooled 70% methanol containing internal standard extraction solution was added, then vortexed for 15 min. Following centrifugation at 12000 rpm, 4°C for 3 min, the supernatant was filtered through a 0.22 μM pore size microporous filter for further testing. Chromatographic analysis was carried out on an SB-C18 chromatographic column at a temperature of 40°C, with a flow rate of 0.35 mL/min and an injection volume of 2 μL. Phase A consisted of 0.1% formic acid ultrapure water, while Phase B comprised 0.1% formic acid acetonitrile. The gradient elution procedure was as follows: at 0 min, the proportion of Phase B was 5%, which linearly increased to 95% within 9 min and was maintained at 95% for 1 min. Subsequently, the proportion of Phase B decreased to 5% within 1 min and was held at 5% for an additional 14 min for equilibrium. Mass spectrometry analysis was performed using the AB 6500 QTRAP mass spectrometer.

Construction of Experimental DN Model and Grouping

Rats were randomly divided into 6 groups, each consisting of 6 rats: the model group (DN), YQBS low-dose group (YQBS-L), YQBS medium-dose group (YQBS-M), YQBS high-dose group (YQBS-H), metformin group (Metformin), and control group (Control). Except the Control group, rats were fed a high-sugar and high-fat diet for 6 weeks and intraperitoneally injected with 35 mg/kg of STZ.46,47 Successful diabetes modeling was confirmed after 72 h when random blood glucose levels were ≥16.7 mmol/L for 3 consecutive days. Following 6 weeks of the high-sugar and high-fat diet, 24 h urine samples were collected. DN modeling was confirmed based on criteria including urine volume greater than 150% of normal, presence of urine sugar, and 24 h urinary albumin exceeding 30 mg. The dosages of YQBS and metformin administered to the rats were determined based on clinical dosages and equivalent conversion between human and rat dosages, with a conversion ratio of 6.3. The YQBS groups received daily gavage of YQBS at doses of 2, 4, and 8 g/kg, while the metformin group received daily gavage of 200 mg/kg metformin. Metformin hydrochloride tablets were provided by Bristol Myers Squibb Co. Rats in either the DN group or the Control group were administered an equal volume of normal saline. The rats’ fur, water and food intake, mental state, urine, and feces were observed daily, and their weight and blood sugar were measured every 4 weeks. After 10 weeks of continuous gavage, Morris water maze (MWM) test was carried out and 24 h urine samples were collected. Subsequently, the blood, kidney, and brain tissues of rats were collected for subsequent analysis.

Morris Water Maze (MWM) Experiment

MWM was adopted to examine the learning and memory function of experimental rats. The water maze was composed by a cylindrical stainless steel pool with a black inner wall, with a diameter of 150 cm and a height of 50 cm. Clean water was filled in the pool to a depth of 25 cm, with the water temperature maintained between 22–25°C. A black solid circular platform with a diameter of 10 cm, was placed in the maze, submerged 1 cm below the water surface and capable of movement. A monitoring system connected to a computer was positioned above the pool. The surroundings of the pool were kept constant, with stable lighting and a quiet environment. Following 10 weeks of gavage administration, the experimental rats began to undergo MWM adaptation training at a frequency of 4 times a day, each lasting for 120s. The water surface was divided into four quadrants, with the platform placed in the center of one quadrant. Rats were placed in the water within one quadrant to search for the platform. When a rat successfully reached the platform, the computer would cease tracking and automatically calculate the time taken for the rat to locate the platform (latency period). If a rat reached the platform within 120s, it would be permitted to stay on it for an additional 15s. However, if a rat failed to reach the platform within 120s, it would be guided to the platform and permitted to stay for an additional 15s, with the latency recorded as 120s. After training for 5 days, the rats were placed in the water within one quadrant, with the platform removed on the 6th day. The number of times and the duration for which the rats passed through the area where the platform had been located were recorded within 120s. The data collected during these experiments were recorded using Topscan Version.

Histopathological Analysis

After collecting 24 h urine and MWM test, rats were intraperitoneal injected of sodium pentobarbital to minimize suffering. The samples of brain tissues were subjected to fixation in 4% paraformaldehyde (Biosharp, BL539A) for a period of 24 h, dehydrated, and embedded in paraffin. Subsequently, they were sectioned in the coronal plane, each with 5 μm in thickness, and stained with hematoxylin and eosin (H&E).

Enzyme-Linked Immunosorbent Assay (ELISA)

The serum levels of TNF-α as well as IL-6 were determined following the instructions provided with the ELISA kits.

Western Blotting

Total protein from kidneys and hippocampus tissues was extracted using a whole protein extraction kit (Solarbio, BC3710). The bicinchoninic acid (BCA) protein quantification kit (Share-Bio, SB-WB013) was used to quantify the protein levels. Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was used to separate proteins from the kidneys and hippocampus, which were then transferred to 0.2μm polyvinylidene fluoride (PVDF) membranes (Immobilon®-PSQ, ISEQ00010). The membranes were sealed with a rapid sealing solution (Servicebio, G2052-500ML) for 15 min at room temperature and subsequently incubated overnight at 4°C with primary antibodies. The dilution ratios for TLR4, NF-κB p65, and phospho-NF-κB p65 were 1:500, 1:2000, and 1:1000, respectively. Subsequently, the membranes were subjected to incubation with secondary antibodies at room temperature and then exposed to a chromogenic solution.

Statistical Analysis

All results were presented as mean ± standard error of the mean (SEM). Multiple group comparisons were conducted using one-way analysis of variance (ANOVA). Data processing and analysis were conducted using GraphPad Prism 8.0 software. A p-value of less than 0.05 was considered statistically significant.

Results

Network Pharmacology Analysis

Active Ingredients and Targets of YQBS

By searching the TCMSP database, a total of 120 active ingredients of YQBS were identified, including 20 active compounds of HQ, 2 active compounds of SD, 12 active compounds of HJ, 7 active compounds of CX, 45 active compounds of GQZ, 23 active compounds of YYH, 9 active compounds of CZ, 4 active compounds of GG, and 14 active compounds of HL. Different drugs in YQBS contain the same active ingredients, with 11 duplicate ingredients, as detailed in Table 1. According to Cytoscape 3.9.1 analysis, 24 active ingredients exhibited a degree value of ≥ 20 (Table 2), mainly including quercetin, kaempferol, β-sitosterol, formaronetin, stigmasterol, luteolin, and wogonin.

Table 1 Information on Repetitive Active Ingredients of YQBS

Table 2 Information on the Main Effective Components of YQBS

The potential targets for active ingredients were retrieved from the TCMSP database and then standardized into gene names using the UniProt database. In total, 1011 targets of YQBS were identified, with 197 from HQ, 30 from SD, 81 from HJ, 25 from CX, 189 from GQZ, 208 from YYH, 53 from CZ, 59 from GG, and 169 from HL. Following the removal of duplicates, a total of 248 different targets were identified. The active ingredients of YQBS and their potential targets were integrated into Cytoscape for the construction of the compound-target network (Figure 1A).

Figure 1 Compound-target network of YQBS and drug-disease target network. (A) TCM are depicted as circles, active ingredients as hexagons, and targets as diamonds. HQ: Astragalus membranaceus; SD: Rehmannia glutinosa; HJ: Polygonatum sibiricum; CX: Ligusticum chuanxiong; GQZ: Lycium barbarum; YYH: Epimedium brevicornu; CZ: Atractylodes lancea; GG: Pueraria lobata; HL: Coptis chinensis. A1: Common ingredients of Astragalus membranaceus, Lycium barbarum, Epimedium brevicornu, and Coptis chinensis; A2: Common components of Rehmannia glutinosa, Polygonatum sibiricum, Ligusticum chuanxiong, and Epimedium brevicornu; B: Common components of Polygonatum sibiricum, Lycium barbarum, and Pueraria lobata; C1-C8: Common components of two types of TCM in YQBS. (B) Venn diagram of the intersection targets among YQBS, DN, and CD. (C) Drug-disease-target network showing 9 drugs, 24 active compounds, and 159 targets. Targets are represented by circles, drugs by diamonds, and compounds by arrows.

Disease Related Targets

The relevant targets associated with DN and CD were retrieved from five databases: OMIM, GeneCards, DrugBank, DisGeNET, and TTD. Upon merging the data and eliminating duplicates, a total of 3816 targets for DN and 8427 targets for CD were compiled.

Common Targets of YQBS and Diseases

The Venny 2.1.0 platform was utilized to identify 159 common targets shared between YQBS, DN, and CD (Figure 1B). These targets are regarded as potential targets for the treatment of DN and CD with YQBS. Subsequently, the drug-disease-target network was visualized using Cytoscape (Figure 1C).

PPI Network Construction and Core Targets

The 159 targets that are common to both diseases and drugs were input into the STRING platform to obtain a preliminary PPI network, resulting in 159 nodes and 3437 connections (Figure 2A). Subsequently, this network was further refined and visualized using Cytoscape (Figure 2B). The data was analyzed and filtered with DC, BC, CC, EC, NC, as well as LAC in Cytoscape. The intermediate values were 43.2327, 133.3081765, 0.556947093, 0.066241445, 34.1962077, and 26.31310603, respectively. A total of 37 core targets with 613 connections surpassing the intermediate values were identified (Table 3), indicating their significance as key targets of YQBS in treating DN complicated with CD. A refined PPI network was then constructed specifically focusing on these key targets using Cytoscape (Figure 2C).

Table 3 Core Targets Information

Figure 2 PPI network, GO functional, and KEGG pathway enrichment analysis. (A) PPI network of YQBS targets for treating DN with CD from STRING. (B) PPI network processed using Cytoscape. (C) PPI network of 37 core targets selected from (B) based on DC, BC, CC, EC, NC, and LAC. (D) Top 10 P-values for BPs, CCs, and MFs. (E) Top 15 signaling pathways identified from KEGG analysis.Drug-target-pathway network construction.

GO and KEGG Analysis

GO analysis of the 37 core targets was conducted on the DAVID platform, resulting in a total of 534 GO entries, including 435 BPs, 33 CCs, and 66 MFs. The top 10 P-values for BPs, CCs, and MFs were selected for the visualization (Figure 2D). The results showed that the main BPs involved positive regulation of gene expression, angiogenesis, cellular response to hypoxia, and positive regulation of pri-miRNA transcription from RNA polymerase II promoter. In terms of CCs and MFs, the most significant categories were macromolecular complex and enzyme binding, respectively.

Through an examination of the KEGG pathways associated with the core targets, 15 highly probable signaling pathways were enriched using Metascape, as shown in Figure 2E. The treatment of DN complicated with CD using YQBS may be mainly related to signaling pathways such as Human cytomegalovirus infection, HIF-1 signaling pathway, and NF-kappa B signaling pathway.

Drug-Target-Pathway Network Construction

The main compounds of YQBS, intersection targets among drugs, diseases and main signal pathways were constructed using Cytoscape (Figure 3). The network among the main active ingredients of YQBS, signal pathways, and key targets was displayed.

Figure 3 Drug-target-pathway Network. There were 9 drugs, 24 active compounds, 159 targets, and 30 signaling pathways in this network. Drugs are represented by hexagons, compounds by diamonds, targets by circles, and signaling pathways by arrows.

Molecular Docking

TNF and IL-6 were identified as core targets. The most significant active components in YQBS were quercetin and kaempferol, with binding energies less than −5.0 kcal/mol, as shown in Table 4. The binding of TNF to quercetin and kaempferol was shown in Figure 4.

Table 4 Results of Docking Between Key Targets and Active Compounds

Figure 4 Molecular docking results. (A) Docking mode of TNF-α and quercetin. (B) Docking mode of TNF-α and kaempferol.

Based on the comprehensive analysis of the drug-target-pathway network, PPI network, GO and KEGG analysis, it is suggested that YQBS may exert its beneficial effects on DN combined with CD through four key targets: TLR4, NF-kB, TNF-α, and IL-6.

Experimental Validation

Identification of the Chemical Composition of YQBS

We used the UPLC-MS/MS method to analyze the main components of YQBS. The total ion chromatograms of YQBS are shown in Figure 5A and B. A total of 1061 metabolites were detected, including quercetin, kaempferol, formononetin, luteolin, wogonin, baicalein, anhydroicaritin, 3′-methoxydaidzein, isorhamnetin, canadine, and other components. These 10 components are ranked in the top 15 in Table 2, indicating that the active ingredients predicted by TCMSP are relatively reliable.

Figure 5 Analysis of the main chemical components of YQBS by UPLC-MS-MS. (A) Negative ion mode. (B) Positive ion mode.

Protective Effect of YQBS on DN Combined with CD in Rats

After YQBS treatment, the weight loss caused by diabetes was reduced to some extent (Figure 6A). The fasting blood glucose (FBG) and 24 h urinary microalbumin concentration (mALB) in the YQBS groups were significantly decreased compared to the DN group (Figure 6B and C), indicating an improvement in renal and pancreatic function.

Figure 6 Experimental verification results in DN rats. (A) Analysis of body weight in each group of rats (n = 6). (B) Comparison of fasting blood glucose (FBG) levels among different groups of rats (n = 6). (C) Comparison of 24 h urinary mALB concentration in rats of each group (n = 6). (D) Representative morphological changes in the hippocampus of rats in each group (HE staining, 200×). (E) Representative morphological changes in the kidneys of rats in each group (HE staining, 200×). ###p < 0.001 compared to the Control; *p < 0.05, **p < 0.01, and ***p < 0.001 compared to the DN.

Besides, the protective effect of YQBS on hippocampal neurons in DN rats was obvious. In the Control group, the hippocampal tissue structure was intact, with a regular arrangement, uniform distribution, clear outline of nerve cells, and round and compact nuclei. In the DN rats, the hippocampal tissue structure was damaged, with disordered arrangement of nerve cells, a sharp reduction in number, abnormal shapes, large gaps, and unclear contours. Following the intervention of YQBS and Metformin, the hippocampal tissue structure of the rats gradually recovered, and the degree of morphological damage to nerve cells significantly improved. The arrangement became relatively orderly, with no significant difference among the various treatment groups (Figure 6D).

The HE results of rat kidney tissue showed that compared with the normal group, the glomerular mesangial matrix in the model group showed slight increase. The renal tubular epithelial cells expanded and showed vacuolar degeneration. The degree of renal tubular vacuolar degeneration was significantly reduced in the YQBS-H and the metformin group (Figure 6E).

Meanwhile, YQBS significantly ameliorated the performance of rats in the MWM test. Compared to the DN group, the escape latency period in the treatment groups was significantly shortened (Figure 7A). In contrast with the Control group, the number of rats crossing the platform area in the DN group was reduced with statistical significance (p < 0.01), and the time spent in the target quadrant was shortened with statistical significance (p < 0.001). Conversely, in contrast with the DN group, the number of platform area crossings in the YQBS-H group increased (p < 0.05), and the time spent in the target quadrant was extended (p < 0.001) with statistical significance, as shown in Figure 7B and C. Figure 7D displays the swimming track diagram of each group of rats in the water maze.

Figure 7 Comparison of MWM performance in each group. (A) Latency period in each group of rats. (B) Time spent in the target quadrant by each group of rats. (C) Frequency of crossing the platform by each group of rats. (D) Representative swimming track diagram of each group of rats. ##p < 0.01, and ###p < 0.001 compared to the Control; *p < 0.05, **p < 0.01, and ***p < 0.001 compared to the DN.

YQBS Alleviated the Expression of TLR4/NF-κB and Inflammatory Factors

YQBS might improve the pathological changes in the hippocampus of DN combined with CD through the TLR4/NF-κB pathway (Figure 8A). Western blotting analysis of TLR4 (Figure 8B), NF-κB p65 (Figure 8C), and phospho-NF-κB p65 (Figure 8D) in the hippocampus revealed a significant reduction in the expressions of TLR4 as well as phospho-NF-κB p65 in the hippocampus of YQBS-H group in contrast with the DN group (p < 0.01). Besides, the trend of changes in protein expression levels of TLR4/NF kB pathway in kidneys is consistent with that in hippocampus (Figure 8E–H). TLR4 as well as phospho-NF-κB p65 in the kidneys of YQBS-H group in contrast with the DN group were also reduced significantly (p < 0.01 or p < 0.001). The expression of TLR4 and phospho-NF-κB p65 in the YQBS-M and Metformin groups also decreased following treatments with YQBS as well as Metformin in contrast with the DN group (p < 0.05 or p < 0.01 or p < 0.001). Based on these results, it could be inferred that the TLR4/NF-κB signaling pathway plays a crucial role in the anti-inflammatory effects of YQBS for DN accompanied with CD.

Figure 8 Expression of TLR4/NF-κB and inflammatory factors. (A) Protein expression levels of TLR4, NF-κB p65, and phospho-NF-κB p65 in hippocampal tissue were determined using Western blotting. (B) Relative quantitative analysis of hippocampal TLR4 expression. (C) Relative quantitative analysis of hippocampal NF-κB p65 expression. (D) Relative quantitative analysis of hippocampal phospho-NF-κB p65 expression. (E) Western blotting was used to detect the protein expression levels of TLR4, NF-κB p65, and phospho-NF-κB p65 in kidney tissue. (F) Relative quantitative analysis of kidney TLR4 expression. (G) Relative quantitative analysis of kidney NF-κB p65 expression. (H) Relative quantitative analysis of kidney phospho-NF-κB p65 expression. (I) Serum level of TNF-α. (J) Serum level of IL-6. ##p < 0.01, and ###p < 0.001 compared to the Control; *p < 0.05, **p < 0.01, and ***p < 0.001 compared to the DN.

Furthermore, ELISA results showed that the levels of TNF-α (Figure 8I) as well as IL-6 (Figure 8J) in serum were higher in the DN group in contrast with the Control group (p < 0.001). Following treatments with YQBS as well as Metformin, the levels of TNF-α alongside IL-6 in serum were reduced compared to the DN group (p < 0.001).

Discussion

Modern medical research has highlighted a connection between DN and CD. In a group of middle-aged and elderly individuals with long-standing DM and a high risk of cardiovascular events, studies have shown that increased levels of albuminuria and cystatin C are closely related to poorer performance in processing speed tests. Additionally, albuminuria has been related to lower scores in verbal memory tests.8 Research has also suggested that retinol-binding protein (RBP4) could serve as a predictor of asymptomatic cerebral infarction in patients with DN, and it was found to be positively correlated with CD.48 Furthermore, certain studies have explored the improvement of DN and CD through specific targets. For example, Esculin has been identified as a potential therapeutic agent that may improve DN with CD through the MAPK signaling pathway, exerting antioxidant stress, and demonstrating anti-inflammatory effects.49 However, despite these advancements, the mechanism and therapeutic targets for CD in DN were not completely clear.

In TCM, there was not a specific term for DN and CD. However, based on clinical symptoms, they can be classified as “Xiaxiao” within the context of “Xiaoke” which combines features of “Daibing” and “Jianwang”. YQBS has shown efficacy in treating DM and its complications of kidney qi deficiency. The recipe includes 9 herbs, and there are 2 sovereign herbs. HQ replenishes qi and raises yang; SD tonifies the kidney, generates essence, and nourishes yin and blood. In TCM theory, the brain is considered the “medullary sea” and adequate kidney essence nourishment is essential for brain health. HJ, GQZ, and CX serve as minister herbs. HJ nourishes yin and qi, tonifies the kidney and essence; GQZ nourishes the liver and kidney, strengthens essence and yang, nourishes blood and promotes fluid production; CX ascends the head, helps lucid yang, promotes blood circulation and unblocking collaterals. YYH, GG, HL and CZ serve as assistant herbs. YYH complements HQ in replenishing qi, and helps HJ and SD in tonifying the kidney; GG and HL can clear heat and detoxify, and they can amplify the effects of tonifying qi and kidney, fortifying the brain, as well as clearing turbidity while detoxifying; CZ functions to dry and invigorate the spleen, promoting the circulation of qi to prevent the greasiness, additionally, it aids in clearing and eliminating stasis caused by phlegm retention. In brief, YQBS tonifies qi and kidney, strengthens the brain and marrow, promotes blood circulation, and detoxifies turbidity. Previous research has demonstrated that YQBS can regulate glucose and lipid metabolism, reduce insulin resistance, and delay the onset and progression of DM and its complications.

The network pharmacology analysis revealed that YQBS contains active ingredients such as quercetin, kaempferol, β-sitosterol, formononetin, stigmasterol, luteolin, and others, which could be used to treat DN combined with CD. Quercetin and kaempferol, both flavonoids, are known for their anti-inflammatory as well as antioxidant properties.50–53 Quercetin has been shown to have various effects such as anti-hyperglycemia, anti-oxidative stress, and anti-inflammation, which can help improve both DN and CD.54–57 Studies have indicated that quercetin can impact targets and pathways like TNF-α, NF-κB, and AKT, leading to benefits such as reduced blood glucose levels, increased insulin sensitivity, facilitating the treatment and prevention of DM and its complications.58 Kaempferol, on the other hand, may offer protective effects against DN by alleviating inflammation, reducing cell apoptosis, and enhancing podocyte autophagy.59,60 It can also potentially impact CD through its antioxidant properties.61 Some research suggests that kaempferol may inhibit TRkβ mediated by the N-methyl-d-aspartate receptor outside the hippocampal synapse thereby improving CD.62

PPI network analysis revealed that the core targets were AKT1, TNF, IL-6, TP53, and VEGFA. The enrichment analysis of GO and KEGG pathways suggested that the mechanism of YQBS in treating DN with CD might be mainly related to Human cytomegalovirus infection, the HIF-1 signaling pathway, the NF-κB signaling pathway, and other associated signaling pathways. The main BPs were positive regulation of gene expression, angiogenesis, and cellular response to hypoxia. TNF and IL-6 were included in 58 and 47 pathways, respectively. The results of molecular docking indicated that TNF and IL-6 had certain binding activity with key components such as quercetin and kaempferol, forming hydrogen bonds. These complexes could be the primary active compounds in YQBS for treating DN with CD. The results of network pharmacology indicated that IL-6 and TNF-α were potential targets of YQBS in the treatment of DN combined with CD. Human cytomegalovirus infection, the HIF-1 signaling pathway, as well as the NF-κB signaling pathway were identified as important signaling pathways. TLR4, NF-κB, IL-6, and TNF-α were implicated in Human cytomegalovirus infection, HIF-1 signaling pathway, and NF-κB signaling pathway.

Inflammation plays a very important role in the occurrence and development of DN and CD.63,64 The NF-κB signaling pathway is a significant inflammatory pathway closely related to the occurrence and development of DN.65 TNF-α and IL-6 are essential cytokines involved in the body’s metabolic processes. Certain drugs that improved DN and CD can significantly inhibit the expression of TNF-α and IL-6 in the kidneys, brain, and blood of rats, as well as reduce inflammatory cell infiltration, indicating that TNF and IL-6 are crucial targets for relieving DN and CD.66–69 TLR4 is widely present in podocytes and microglia. TLR4 could activate NF-κB when in a quiescent state. The activated NF-κB p65 can regulate the expression of various inflammatory factors, including TNF-α, IL-6, and other factors, thereby inducing inflammatory responses and exacerbating DN and central nervous system diseases such as cognitive impairment.70–73 The results from network pharmacology indicated that the key targets and pathway of YQBS in treating DN combined with CD are TNF-α, IL-6, as well as the NF-κB pathway. Therefore, we investigated whether YQBS could mitigate inflammation through the TLR4/NF-κB signaling pathway via animal experimental validation. The animal experimental validation results showed that YQBS could enhance renal and cognitive function in DN rats. Compared to the DN group, the expressions of TLR4, NF-κB, TNF-α, and IL-6 in the kidneys and hippocampus of the YQBS group were significantly decreased. This study suggests that YQBS may act through the TLR4/NF-κB pathway, influencing the expressions of TNF-α alongside IL-6. YQBS may reduce inflammation through this pathway, thereby alleviating DN complicated with CD (Figure 9).

Figure 9 The mechanism diagram of YQBS alleviating DN with CD.

This study provided a basis for further investigations into the anti-inflammatory effects of YQBS on both kidney and hippocampal tissues. It represented a breakthrough in elucidating the therapeutic basis and pharmacological mechanism of TCM in the treatment of DN with CD, offering insights and a research foundation for future research on the “Kidney-Brain Axis”. However, this study had some limitations. Some targets of DN and CD may not be currently included in public databases. The results demonstrated that YQBS could improve DN with CD in rats. However, further research is necessary to fully understand the underlying mechanism.

Conclusion

YQBS and its active ingredients have been shown to have positive effects in the treatment of diabetes and its complications. Network pharmacology analyses and experimental validation have indicated quercetin and kaempferol, two important components of YQBS, as the main contributors to its anti-inflammatory activity, and the mechanism underlying its anti-inflammatory effects may involve TLR4/NF-κB signaling pathway. These findings provide basis and ideas for the future research and development of YQBS, which could help alleviate the pressure on patients suffering from diabetic complications. The present research lays a theoretical foundation and insights for future experimental investigations and clinical practice. Additionally, it has provided significant progress in elucidating the pharmacological basis and mechanism of traditional Chinese medicine in inflammatory-induced diabetic complications.

Data Sharing Statement

Data is contained within the article.

Ethical Approval and Consent to Participate

Ethical approval to conduct studies using publicly available databases is exempt under the following legislation:

Item 1 and 2 of Article 32 of “the Measures for Ethical Review of Life Science and Medical Research Involving Human Subjects”, which was reviewed by the National Science and Technology Ethics Committee, approved by the State Council of China, and jointly promulgated by the National Health Commission, the Ministry of Education, the Ministry of Science and Technology and the State Administration of Traditional Chinese Medicine on Feb. 18, 2023.

This study was conducted in accordance with the ARRIVE guidelines for in vivo experiments. This study was approved by the Experimental Animal Ethics Committee of Qilu Hospital of Shandong University (DWLL-2022-073) following the guidelines for the ethical review of laboratory animal welfare People’s Republic of China National Standard GB/T 35892-2018.

Funding

This study was supported by the Qilu Geriatric Diseases Chinese and Western Academic School Inheritance Workshop Project (No. 2022-93-1-10).

Disclosure

The authors declare that they have no conflicts of interest in this study.

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