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Using Olink Proteomics to Identify Inflammatory Biomarkers in the Cerebrospinal Fluid in Guillain-Barré Syndrome
Authors Sun S, Li M, Song J, Zhong D
Received 5 December 2024
Accepted for publication 17 May 2025
Published 25 May 2025 Volume 2025:18 Pages 6703—6717
DOI https://doi.org/10.2147/JIR.S507515
Checked for plagiarism Yes
Review by Single anonymous peer review
Peer reviewer comments 2
Editor who approved publication: Dr Adam D Bachstetter
Shuanghong Sun, Meng Li,* Jihe Song,* Di Zhong
Department of Neurology, The First Hospital of Harbin Medical University, Harbin, Heilongjiang, People’s Republic of China
*These authors contributed equally to this work
Correspondence: Di Zhong, Department of Neurology, The First Hospital of Harbin Medical University, Harbin, Heilongjiang, People’s Republic of China, Email [email protected]
Purpose: The precise etiology of Guillain-Barré syndrome (GBS) is uncertain; however, it is linked to immunological and inflammatory processes. Thus, this research aims to investigate new inflammatory biomarkers for GBS diagnosis.
Patients and Methods: In this work, Olink proteomics was used to compare the expression levels of 92 inflammation-related proteins in the cerebrospinal fluid (CSF) of patients with non-inflammatory neurological diseases (n=14) and GBS (n=23). Differentially expressed proteins (DEPs) were then analyzed biologically and in terms of their relationship to clinical features, and logistic regression models were built. We also downloaded GEO data to validate DEPs at the mRNA level.
Results: We identified twenty DEPs. The PPI network screened six key DEPs (including TNF, CCL20, IL8, MCP-1, IL10, and IL5). These DEPs were enriched in the chemokine signaling pathway, the IL-17 signaling pathway, cytokines and their receptor interactions, and other pathways. TNFRSF9 and IL-10RB showed the strongest correlation of expression in CSF. CCL20 and IL5 could be used as potential independent predictors for the diagnosis of GBS. Seven DEPs (MCP-1, CXCL1, MCP-4, MMP-10, CXCL10, CCL28, and CCL20) had some predictive value for the severity of GBS. Based on the validation of the GEO data, the mRNA expression of MCP-1 and CXCL9 was found to be upregulated at the peak of EAN, and the enriched pathways at the gene transcription level were consistent with the results of this study.
Conclusion: DEPs linked to inflammation (such as TNF, CCL20, IL8, MCP-1, IL10, and IL5) could be useful biomarkers for GBS diagnosis. More research is required to determine their precise mechanisms in GBS.
Keywords: Guillain-Barré syndrome, inflammation, biomarkers, olink proteomics, bioinformatics analysis
Introduction
The most frequent cause of acute flaccid paralysis worldwide is Guillain-Barré Syndrome (GBS),1 characterized by symmetrical ascending muscle weakness, reduced tendon reflexes, and different degrees of sensory involvement. Between 0.81 and 1.91 cases of GBS are reported for every 100,000 people annually.2 Men are more likely than women to develop the condition, with an incidence that rises by 20% for every ten years of age. Between 3% and 7% of people die from the condition, and up to 20% of people lose their ability to walk on their own six months after the illness first manifests.3,4 Though the exact cause of GBS is unknown, it is currently thought to be an autoimmune-mediated peripheral neuropathy. This process is brought on by molecular mimicry between gangliosides on the membranes of microorganisms and peripheral nerve cells,5 which activates the complement and macrophage systems, T cell-mediated cytotoxicity, and other immune responses that cause demyelination and axonal damage in the peripheral nervous system, respectively, and ultimately advances the disease.6 The two most popular immunotherapies for treating GBS are plasma exchange and intravenous immunoglobulin.7 In principle, immunotherapy should be started as soon as possible before irreversible neurological damage occurs. Still, because there are multiple subtypes and variants of GBS, there are no specific diagnostic biomarkers and a lack of targeted therapeutic interventions.8
Many biomarkers have been linked to GBS in recent years. These include decreased levels of TGOLN2 and NCAM1 and increased levels of APOC3 in the CSF of GBS patients compared to patients with noninflammatory neurological disease(NND),9 and serum C3 complement levels as a predictor of the prognosis of GBS and for tracking disease activity.10 In Guillain-Barre syndrome, Thomma et al discovered that high and sustained anti-GM1 antibody titers were linked to a poor prognosis.11 Although these biomarkers have been linked to GBS, the diagnosis has limits. Few of these biomarkers are being used clinically.12 Thus, searching for new GBS biomarkers is vital to learning more about the disease’s etiology, providing early and precise diagnosis, and enhancing patient outcomes.
Olink proteomics is the accurate detection of proteins based on the highly sensitive, particular, and excellently scalable proximity extension assay.13,14 This development has dramatically aided in identifying novel biomarkers for prognosis and disease prediction and improved comprehension of the molecular mechanisms of pathogenesis and the distinctive signaling networks associated with particular diseases.15 In this paper, we analyzed the expression levels of CSF inflammation-related proteins in patients with GBS at the peak of the disease and in control patients using Olink proteomics technology. Additionally, logistic regression model building and bioinformatic analysis were carried out. To study the biomarkers of GBS cerebrospinal fluid to explore the role of immune inflammation in developing GBS and related mechanisms and to provide a theoretical basis for the diagnosis and targeted therapy of GBS.
Materials and Methods
Patient Selection and Clinical Data Collection
The experimental group consisted of twenty-three GBS patients hospitalized at the First Hospital of Harbin Medical University between January 2021 and December 2022. In contrast, the control group consisted of fourteen patients with NND. All patients in the experimental group were at the peak of the illness and satisfied the diagnostic requirements for Guillain-Barré syndrome.16 Exclusion of patients with infection, fever, and immunomodulatory therapy before baseline sampling. Clinical information about the patients was documented, such as their sex, age, duration of hospitalization, clinical signs and symptoms, blood counts, results from the CSF, and Hughes Functional Classification Scale score at the height of the illness.17,18 Every patient enrolled in the study signed an informed consent form, which was carried out in compliance with the principles of the Declaration of Helsinki. The First Hospital Ethics Committee of Harbin Medical University approved this study (No. 2019115).
Collection of CSF Specimens
All recruited patients had 2 mL of CSF extracted at their initial lumbar puncture following hospital admission, which was then kept in a refrigerator at −80°C.
Proteomics Analysis
A proximity extension assay from Olink, which analyzes 92 inflammation-related biomarkers simultaneously, was used to analyze CSF samples.19 In short, two antibody probes labeled with oligonucleotides attached to a target protein. The oligonucleotides then hybridize in pairs when the two probes are close. DNA polymerase is added, and this causes a DNA polymerization reaction that yields a distinct PCR target sequence. A microfluidic real-time PCR device (Signature Q100, OLINK) is then used to identify and measure the resultant DNA sequence. Following quality control and normalization of the resultant Ct data using a series of internal and external controls, the assay readings are reported as Normalized Protein Expression (NPX) values, where higher values correspond to higher protein expression levels.20,21
Bioinformatics Analysis
The protein expression levels in the two groups were compared differently in the Olink data results, and the Benjamini-Hochberg method was used to adjust for multiple comparisons. Following screening correction, proteins were classified as differentially expressed proteins (DEPs) if their p-value was less than 0.05. DEPs were visualized in the R program using the ggplot2 package, pheatmap package, etc. The discovered DEPs were subjected to pathway enrichment studies by the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO),22,23 with p values < 0.05 and q values < 0.05. In both the experimental and control groups, all 92 inflammation-associated biomarkers were subjected to Gene Set Enrichment Analysis (GSEA).24 Using DEPs as query proteins and Cytoscape for visualization, the STRING database (http://string-db.org) was used to evaluate protein-protein interactions (PPI) in functional protein binding networks.25 We used the cytoNCA topology analysis plugin to screen for key differentially expressed proteins using the Betweenness Centrality (BC) algorithm.26
Construction of Logistic Regression Models
Using SPSS 25.0 software, the R software rms package, the pROC package, and the multipleROC tool, we ran a one-way logistic regression analysis on 20 CSF DEPs. After the proteins were screened using the single-factor logistic regression analysis, they were subjected to a regression analysis using the least absolute shrinkage and selection operator (LASSO) in R software. This method was used to select features and confirm the appropriate tuning parameter (λ) for the LASSO logistic regression. Cross-validation was also employed. Finally, multifactorial stepwise logistic regression analysis was incorporated to apply statistically significant predictors, construct a predictive model, and plot risk column lines.27,28 The receiver operating characteristic (ROC) curve was used to evaluate the diagnostic performance of the DEPs, and the area under the curve (AUC) was computed.29
GEO Data Validation
The Gene Expression Omnibus (GEO) database (http://www.ncbi.nlm.nih.gov/geo) provided us with the GSE133750 dataset. This dataset represents a transcriptome sequencing of the sciatic nerve in a rat animal model of GBS called experimental autoimmune neuritis (EAN). We then used the R software’s DESeq2 package to estimate the levels of gene expression and identified differentially expressed genes (DEGs) based on peak EAN and control-adjusted p-values < 0.05 and |log2 fold change| ≥ 1, as well as DEGs. We used the ggplot2 package to visualize volcano plots. After finding the intersection of DEGs and DEPs, we analyzed the discovered DEGs for GO and KEGG pathway enrichment using the R software Venn diagram package and ggplot2 package to create Wayne diagrams.
Statistical Analysis
Software such as SPSS (version 25.0), GraphPad (version 8.0.2), R (version 4.3.0), and Cytoscape (version 3.9.1) were used for statistical data analysis. Data are provided as mean ± standard deviation (normal distribution) or median (P25, P75). The Wilcoxon rank sum test or the two-tailed independent samples t-test was used to compare the mean differences between the two groups. Pearson or Spearman conducted correlation analysis. Statistics were deemed significant if P<0.05.
Results
Clinical Characteristics of Patients in the GBS and NND Groups
This study comprised 37 samples, including 14 patients with NND and 23 with GBS. The general clinical characteristics of all subjects are shown in Table 1.
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Table 1 Clinical Characteristics of the Study Population |
Screening for Differentially Expressed Proteins in CSF
Details of the Olink proteomics technology’s identification of 92 inflammation-associated proteins are provided in Table S1. We screened 20 differentially expressed proteins associated with the development of GBS compared to control patients. The majority of these belonged to the chemokine and cytokine groups (Table S2). One protein (IL5) had its expression downregulated, whereas 19 other proteins (IL8, CD244, IL-17C, MCP-1, CXCL9, CXCL1, CD6, IL18, MCP-4, IL-10RB, IL-18R1, MMP-10, IL10, TNF, CD5, CXCL10, CCL28, TNFRSF9, and CCL20) had their expression raised (Figure 1A). Two clusters with distinct accumulation patterns were visible in the heatmaps of all 20 DEPs (Figure 1B), and Figure 1C displays the differences in protein expression between the GBS and NND groups.
Bioinformatic Analysis of DEPs Associated with GBS Inflammation
We used GO and KEGG enrichment analysis to investigate the role of CSF DEPs in GBS in more detail. Cell chemotaxis, cellular response to LPS, cytokine activity, and other phrases were among the enriched GO terms displayed in Figure 2. Cytokine-cytokine receptor interactions, viral proteins interacting with cytokines and cytokine receptors, chemokine signaling routes, IL-17 signaling pathways, TNF signaling pathways, and other pathways implicated in GBS pathogenesis were identified by KEGG enrichment analysis (Figure 3A). We also conducted GSEA analysis to investigate the signaling pathways enriched by the gene collection of CSF proteins from GBS patients (Figure 3B). These proteins were implicated in JAK-STAT signaling pathways, cytokine-cytokine receptor interactions, and chemokine signaling pathways in this investigation. To vividly illustrate the connections between the proteins, we built a PPI network, as seen in Figure 3C. Six proteins were identified as important nodes in the PPI network, including TNF, CCL20, IL8, MCP-1, IL10, and IL5. This implies that they might have significant functions in GBS and could be useful biological indicators for GBS prediction.
Correlation Analysis Between Differentially Expressed Inflammatory Proteins
We further analyzed the correlation between DEPs in the CSF (Figure 4A). IL8 and MCP-1 (R = 0.812, P = 2.51×10−6), MCP-1 and CCL20 (R = 0.747, P = 4.21×10−5), CCL20 and IL8 (R = 0.726, P = 8.71×10−5), and CXCL10 and MCP-4 (R = 0.907, P = 2.41×10−9) were found to have high associations. This finding suggests the possibility of a synergistic expression profile across members of the chemokine family. The strongest connection in CSF was seen between TNFRSF9 and IL-10RB (R = 0.946, P = 1.03×10−11), and scatter plots were created using this information (Figure 4B). This may reflect the dynamic balance between pro-inflammatory (TNF) and anti-inflammatory (IL10) pathways during the acute phase of GBS.
Correlation Analysis of DEPs with Clinical Features
As seen in Figure 4C, the relationships between each CSF protein and clinical characteristics were evaluated. CCL20 (R = 0.46, P = 0.037) demonstrated a positive correlation with hospitalization days, indicating that it might be a reflection of the course of the disease. Monocyte percentage, CXCL9 (R = 0.53, P = 0.014), and IL5 (R = 0.45, P = 0.031) showed a pattern of correlation, which could indicate monocyte-macrophage system activation. IL10 and CSF IgM were shown to be positively correlated (R = 0.47, P = 0.027). The three proteins that showed a positive connection with the Hughes score were MCP-4 (R = 0.48, P = 0.019), CXCL10 (R = 0.42, P = 0.042), and CCL28 (R = 0.47, P = 0.024). This implies that they may serve as indicators of the severity of the condition.
Constructing Logistic Regression Models
We created one-way logistic regression models for every protein in the CSF of GBS patients to assess the diagnostic potential of 20 DEPs, and we then displayed forest plots (Figure 5A). Sixteen potential proteins were initially identified as IL8, CD244, MCP-1, CXCL9, CXCL1, CD6, IL18, IL-10RB, IL-18R1, MMP-10, IL10, TNF, CCL28, TNFRSF9, CCL20, and IL5.
The best predictors of the current risk variables were chosen by using the LASSO regression approach to the proteins tested in the one-way logistic regression analysis, as illustrated in Figure 5B and C. Six prospective predictors with non-zero coefficients were ultimately chosen from among the 16 pertinent variables: CXCL9, CD6, IL10, TNF, CCL20, and IL5.
Multifactorial logistic stepwise regression analysis was then used to introduce the features selected in the LASSO regression model and construct a predictive model to identify potential biomarkers. Among these, CCL20 and IL5 showed statistically significant differences and were plotted accordingly in the GBS risk nomogram (Figure 5D). This implies that IL5 downregulation and CCL20 overexpression may work together to predict GBS. An AUC of 0.748 for CCL20 (Figure 5E) and 0.705 for IL5 (Figure 5F) were obtained by ROC analysis. CCL20 and IL5 together had a better diagnostic capacity than either indicator alone (AUC of 0.807) (Figure 5G).
Predictive Value of DEPs for GBS Disease Severity
A mild group (Hughes ≤3 points, n = 16) and a severe group (Hughes >3 points, n = 7) were separated from the GBS patients in order to evaluate the relationship between CSF DEPs and the severity of GBS. We created a forest plot and conducted a one-way logistic regression analysis (Figure 6A). The results showed that MCP-4 and CCL28 were significantly correlated with disease severity and could be used as potential predictors for the diagnosis of severe GBS. The AUC values of seven proteins (MCP-1, CXCL1, MCP-4, MMP-10, CXCL10, CCL28, and CCL20) were found to be >0.7 when the predictive power of DEPs for severe GBS was examined using ROC curves (Figure 6C). Of them, MCP-4’s diagnostic value (AUC=0.804) outperformed the other six DEPs. With an AUC of 0.857, the seven DEPs indicated severe GBS (Figure 6B). However, more functional studies are required to confirm if these markers directly influence the course of the disease.
Validation of DEPs at mRNA Level Using GEO Data
We acquired the sciatic nerve transcriptome data of the EAN rat model from the GEO database (GSE133750) in order to confirm the accuracy of the proteomics findings. Rats’ peripheral nerve tissues during the peak of EAN showed significantly different mRNA expression from controls, according to statistical analysis. A volcano plot was created, showing 126 genes with up-regulated expression and 11 with down-regulated expression (Figure 7A). A Venn diagram was created by intersecting the 137 DEGs in EAN with the 20 DEPs in GBS (Figure 7B). The findings demonstrated a substantial upregulation of MCP-1 and CXCL9 at the mRNA and protein levels. The involvement of MCP-1 and CXCL9 in GBS was further reinforced by the findings that overlapped across proteomics and genomes.
We compared two data sets, DEGs and DEPs, using GO and KEGG functional enrichment pathways in order to better explore the possible roles of DEGs. Cell chemotaxis, neutrophil migration, cellular reactions to lipopolysaccharide and bacterial-derived compounds, and leukocyte chemotaxis were all found to exhibit co-enrichment of biological processes (Figure 8A). The lumen of tertiary granules, which is the outer side of the plasma membrane, showed co-enriched cellular components (Figure 8B). This could indicate that inflammatory substances were secreted into the extracellular microenvironment. G protein-coupled receptor binding, cytokine and chemokine activity and receptor binding, and CXCR and CCR chemokine receptor binding were all found to have co-enriched molecular functions (Figure 8C). Co-enrichment involving chemokine signaling pathways, interactions between cytokines and their receptors, and interactions of viral proteins with cytokines and their receptors was found by KEGG enrichment analysis (Figure 8D). Given that these pathways overlap, it is possible that the transcript-protein level of the inflammatory mechanism of GBS is somewhat conserved. Future research on the precise pathways must be conducted in conjunction with in vivo models.
Discussion
Guillain-Barré syndrome’s pathophysiology includes intricate humoral and cellular immunological responses,30,31 and diagnosis and treatment are complicated by the syndrome’s heterogeneity.32 By using Olink proteomics technology and increasing the sample size (n=37) in comparison to a prior work that relied on tandem mass spectrometry labeling technology (n=20),9 we were able to obtain more accurate and sensitive detection results. As cerebrospinal fluid samples better indicate inflammatory alterations in the nerve roots, we employed them instead of serological tests of GBS.33 Thus, the proteomic characterization of CSF inflammation during the acute phase of GBS was the main focus of our investigation. Although several molecules, including TNF, CCL20, IL8, MCP-1, IL10, and IL5, were identified as potential biological indicators, their pathogenesis and specificity must be confirmed before they can be used in clinical settings.
Certain chemokines increased expression in GBS. For the first time in our investigation, we found that CCL20 was higher in GBS CSF, positively connected with hospital stay duration (r=0.46), and showed some diagnostic utility in predicting GBS (AUC=0.75). By attracting Th17 cells, CCL20, a ligand for CCR6, may contribute to the autoimmune assault on peripheral neurons in GBS.34–36 In multiple sclerosis (MS), plasma CCL20 correlates exponentially with disease severity, whereas the Th17 pathway is more involved in CNS demyelination in MS.37 This variation in inflammatory location could account for a portion of CCL20’s specificity in GBS. In line with other findings, we discovered increased levels of IL8, MCP-1, and CXCL10 in the CSF of GBS.38–40 It was discovered that the degree of nerve root inflammation was reflected in the amount of IL8 in the CSF of GBS patients. In order to distinguish GBS from chronic inflammatory demyelinating polyneuropathy (CIDP), a threshold of 73 ng/L for IL8 was established, indicating that IL8 might be a molecule unique to GBS.38 We discovered that CCR2+ monocyte/macrophage infiltration was markedly elevated in the sciatic nerve and that MCP-1 transcript levels were up in peripheral nerve tissue from EAN rats.41 This discovery implies that monocyte recruitment in GBS peripheral nerves may be mediated via the MCP-1/CCR2 axis. Future research must use in vivo tests to further examine the specificity of chemokines in GBS, as they are seen in a wide range of inflammatory illnesses.
Huang et al discovered that TNF expression was considerably higher in serum from GBS patients and dropped following immunotherapy,42,43 indicating that it might be connected to how GBS progresses. Notably, serum TNF may mainly originate from systemic immune activation, whereas elevated CSF TNF is more directly indicative of a localized inflammatory microenvironment in peripheral nerves. According to related research, autoimmune demyelination is triggered by the interferon gamma-induced macrophage TNF-α signaling axis, which promotes pro-inflammatory polarization through metabolic reprogramming.44 When it comes to autoimmunity caused by Clostridium jejuni, IL10 plays a negative regulatory effect.45 IL10 mRNA was expressed at its highest level in EAN at the peak of disease,46 which is consistent with our observation in GBS. One possible explanation for IL10 overexpression is a compensatory anti-inflammatory response.47 By inhibiting immunoinflammation and neural demyelination and activating the JAK-STAT pathway, IL-5 lessens the severity of EAN.48,49 In this study, IL5 expression was reduced, and its anti-inflammatory properties might be inhibited during the acute stage of GBS. It has been proposed that IL5 facilitates the recovery of heart failure following myocardial infarction by encouraging macrophage polarization.50 We hypothesized that IL5 expression is temporally dynamic and may be elevated during the recovery phase. Interfering with IL5 may be a viable treatment strategy for GBS, although long-term research is required to confirm this hypothesis. Furthermore, the cellular origin of IL5 and IL10 remains unclear and requires additional elucidation using flow cytometry or single-cell sequencing.
DEPs were found to be enriched in immune-related and inflammatory pathways. The TNF signaling pathway was found to be consistent with earlier research and may be involved in the regulation of the local neural immune microenvironment and promote the release of inflammatory factors by activating the macrophage NF-κB pathway.44 The viral protein-cytokine interaction pathway’s enrichment could be a sign of a molecular mimicry mechanism that was started by infections (like Campylobacter jejuni) before GBS developed. Th17 cell involvement in GBS is supported by IL17 pathway enrichment.51,52 Unlike in MS, IL17 may target Schwann cells instead of oligodendrocytes to cause peripheral nerve demyelination in GBS.53 But more proof is needed for this conjecture.
In our study, correlation analysis showed that differentially expressed proteins were linked with total CSF protein, IgG, IgM, neutrophil percentage, and SII. This implies that these might be clinical variables associated with inflammation in GBS. However, both protein expression and clinical symptoms may be impacted by confounding factors such as patient age and length of disease.54 Variations in the expression of specific differentially expressed proteins could be the cause of inflammation associated with the disease or one of the factors contributing to GBS. Therefore, this study focuses on the discovery phase to provide evidence of a preliminary association. Follow-up studies are needed to further validate the causal relationship by investigating the pathological mechanisms through in vivo experiments. CCL20 and IL5 were identified as possible independent predictors for the diagnosis of GBS through the stepwise screening of differentially expressed proteins using LASSO regression and the development of a logistic regression model.55,56 The severity of GBS was predicted by seven DEPs: MCP-1, CXCL1, MCP-4, MMP-10, CXCL10, CCL28, and CCL20. In exploratory investigations, these biomarkers demonstrated a modest level of diagnostic effectiveness; nonetheless, multi-step validation is necessary for clinical translation. The present study provides preliminary evidence for this process.
This study has some limitations. First, because the disease is rare, the recruiting period was brief, and the sampling was intrusive (such as collecting CSF fluid), the study’s sample size was small. The statistical efficacy of a small number of differentially expressed proteins was not good. Second, the AUC values of the identified biomarkers suggest some diagnostic potential; however, further, larger, prospective GBS clinical cohort investigations are required to determine their clinical relevance. Third, this study used bioinformatics analysis to suggest key signaling pathways, but there was no in vitro validation or animal experimentation. Therefore, the biological significance of these molecules and their causal relationship with GBS remain speculative, and subsequent construction of animal models of GBS is needed to validate the specific mechanisms of the identified biomarkers.
Conclusion
We concluded by identifying 20 DEPs as possible biomarkers for the diagnosis of GBS, including TNF, CCL20, IL8, MCP-1, IL10, and IL5. The chemokine signaling route, the IL17 signaling pathway, and cytokine-receptor interactions were among the pathways in which these DEPs were enriched. Although the specific mechanisms of these DEPs in GBS need to be further investigated, this study provides new clues for the clinical diagnosis of GBS. Future studies will further evaluate the diagnostic accuracy of these DEPs and their potential in clinical applications by expanding the clinical sample size and in vivo experiments.
Acknowledgments
We thank the patients and their families who participated in this study.
Author Contributions
All authors made a significant contribution to the work reported, whether that is in the conception, study design, execution, acquisition of data, analysis and interpretation, or in all these areas; took part in drafting, revising or critically reviewing the article; gave final approval of the version to be published; have agreed on the journal to which the article has been submitted; and agree to be accountable for all aspects of the work.
Funding
This work was supported by the National Natural Science Foundation of China (No. 81873773).
Disclosure
The authors have declared that no competing interest exists in this work.
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